| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 11441 |
| Arabian Sea | Sea/Bay/Gulf | native | 3483 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3414 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3483 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3414 |
| Indian Ocean | Sea/Bay/Gulf | native | 3483 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3414 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104679 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Persian Gulf | Sea/Bay/Gulf | native | 3483 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 10558 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Visayan Sea | Sea/Bay/Gulf | native | 3557 |